Shewanella japonica sp. nov.
Identifieur interne : 00BB91 ( Main/Exploration ); précédent : 00BB90; suivant : 00BB92Shewanella japonica sp. nov.
Auteurs : Elena P. Ivanova [Russie] ; Tomoo Sawabe [Japon] ; Nataliya M. Gorshkova [Russie] ; Vassillii I. Svetashev [Russie] ; Valery V. Mikhailov [Russie] ; Dan V. Nicolau [Australie] ; Richard Christen [France]Source :
- International journal of systematic and evolutionary microbiology : (Print) [ 1466-5026 ] ; 2001.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Eau, Milieu marin.
English descriptors
- KwdEn :
Abstract
Two strains of agar-digesting bacteria, KMM 3299T and KMM 3300, respectively isolated from sea water and the mussel Protothaca jedoensis, have been characterized. Based on sequencing of the 165 rRNA gene, KMM 3299T showed the highest similarity (93-95%) to members of the genus Shewanella. The G+C contents of the DNAs of these strains were 43-44 mol%. The level of DNA homology between the two strains was conspecific (95%), indicating that they represent a distinct genospecies. These organisms were non-pigmented, Gram-negative, polarly flagellated, facultatively anaerobic, mesophilic, neutrophilic and able to degrade a wide range of high molecular mass polymers, including alginate, carrageenan, laminaran and agar. The novel organisms were susceptible to gentamycin, carbenicillin, lincomycin and oleandomycin. The predominant cellular fatty acids were i-15:0, 16:0, 16:1(n-7), 18:1(n-7). Eicosapentaenoic acid, 20:5(n-3), was detected in the two isolates at levels of 1-8%, depending on the temperature of cultivation. Phylogenetic evidence, together with phenotypic characteristics, showed that the two isolates studied constitute a novel species of the genus Shewanella. The name Shewanella japonica is proposed; the type strain is KMM 3299T(= LMG 19691T = CIP 106860T).
Affiliations:
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Ivanova</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>3 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Sawabe, Tomoo" sort="Sawabe, Tomoo" uniqKey="Sawabe T" first="Tomoo" last="Sawabe">Tomoo Sawabe</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Laboratory of Microbiology, Faculty of Fisheries, Hokkaido University</s1><s2>3-1-1 Minato-cho, Hakodate 041-8611</s2><s3>JPN</s3><sZ>2 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>3-1-1 Minato-cho, Hakodate 041-8611</wicri:noRegion></affiliation></author><author><name sortKey="Gorshkova, Nataliya M" sort="Gorshkova, Nataliya M" uniqKey="Gorshkova N" first="Nataliya M." last="Gorshkova">Nataliya M. 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Ivanova</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>3 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Sawabe, Tomoo" sort="Sawabe, Tomoo" uniqKey="Sawabe T" first="Tomoo" last="Sawabe">Tomoo Sawabe</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Laboratory of Microbiology, Faculty of Fisheries, Hokkaido University</s1><s2>3-1-1 Minato-cho, Hakodate 041-8611</s2><s3>JPN</s3><sZ>2 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>3-1-1 Minato-cho, Hakodate 041-8611</wicri:noRegion></affiliation></author><author><name sortKey="Gorshkova, Nataliya M" sort="Gorshkova, Nataliya M" uniqKey="Gorshkova N" first="Nataliya M." last="Gorshkova">Nataliya M. Gorshkova</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>3 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Svetashev, Vassillii I" sort="Svetashev, Vassillii I" uniqKey="Svetashev V" first="Vassillii I." last="Svetashev">Vassillii I. Svetashev</name><affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences</s1><s2>690041 Vladivostok</s2><s3>RUS</s3><sZ>4 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences</wicri:noRegion></affiliation></author><author><name sortKey="Mikhailov, Valery V" sort="Mikhailov, Valery V" uniqKey="Mikhailov V" first="Valery V." last="Mikhailov">Valery V. Mikhailov</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>3 aut.</sZ><sZ>5 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Nicolau, Dan V" sort="Nicolau, Dan V" uniqKey="Nicolau D" first="Dan V." last="Nicolau">Dan V. Nicolau</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Industrial Research Institute, Swinburne University of Technology, PO Box 218</s1><s2>Hawthorn, Victoria 3122</s2><s3>AUS</s3><sZ>6 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Hawthorn, Victoria 3122</wicri:noRegion></affiliation></author><author><name sortKey="Christen, Richard" sort="Christen, Richard" uniqKey="Christen R" first="Richard" last="Christen">Richard Christen</name><affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Centre National de la Recherche Scientifique et Universite Pierre et Marie Curie, Station Zoologique</s1><s2>Villefranche-sur-Mer 06230</s2><s3>FRA</s3><sZ>7 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>06230</wicri:noRegion><wicri:noRegion>Station Zoologique</wicri:noRegion><wicri:noRegion>Villefranche-sur-Mer 06230</wicri:noRegion></affiliation></author></analytic><series><title level="j" type="main">International journal of systematic and evolutionary microbiology : (Print)</title><title level="j" type="abbreviated">Int. j. syst. evol. microbiol. : (Print)</title><idno type="ISSN">1466-5026</idno><imprint><date when="2001">2001</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">International journal of systematic and evolutionary microbiology : (Print)</title><title level="j" type="abbreviated">Int. j. syst. evol. microbiol. : (Print)</title><idno type="ISSN">1466-5026</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agar</term><term>Aminoglycoside</term><term>Carbenicillin</term><term>Carrageenan</term><term>Characterization</term><term>Content</term><term>Gene</term><term>Isolate</term><term>Isolation</term><term>Macrolide</term><term>Penicillin derivatives</term><term>Ribosomal DNA</term><term>Ribosomal RNA</term><term>Sequencing</term><term>Shewanella</term><term>Similarity</term><term>Strain</term><term>Water</term><term>β-Lactams</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Shewanella</term><term>Souche</term><term>Gélose</term><term>Isolat</term><term>Isolement</term><term>Eau</term><term>Caractérisation</term><term>Séquençage</term><term>RNA ribosomique</term><term>Carraghénane</term><term>Carbénicilline</term><term>β-Lactamines</term><term>Pénicilline dérivé</term><term>Aminoglycoside</term><term>Macrolide</term><term>Similitude</term><term>Teneur</term><term>DNA ribosomique</term><term>Gène</term><term>Milieu marin</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Eau</term><term>Milieu marin</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Two strains of agar-digesting bacteria, KMM 3299T and KMM 3300, respectively isolated from sea water and the mussel Protothaca jedoensis, have been characterized. Based on sequencing of the 165 rRNA gene, KMM 3299T showed the highest similarity (93-95%) to members of the genus Shewanella. The G+C contents of the DNAs of these strains were 43-44 mol%. The level of DNA homology between the two strains was conspecific (95%), indicating that they represent a distinct genospecies. These organisms were non-pigmented, Gram-negative, polarly flagellated, facultatively anaerobic, mesophilic, neutrophilic and able to degrade a wide range of high molecular mass polymers, including alginate, carrageenan, laminaran and agar. The novel organisms were susceptible to gentamycin, carbenicillin, lincomycin and oleandomycin. The predominant cellular fatty acids were i-15:0, 16:0, 16:1(n-7), 18:1(n-7). Eicosapentaenoic acid, 20:5(n-3), was detected in the two isolates at levels of 1-8%, depending on the temperature of cultivation. Phylogenetic evidence, together with phenotypic characteristics, showed that the two isolates studied constitute a novel species of the genus Shewanella. The name Shewanella japonica is proposed; the type strain is KMM 3299T(= LMG 19691T = CIP 106860<sup>T</sup>).</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Japon</li><li>Russie</li></country></list><tree><country name="Russie"><noRegion><name sortKey="Ivanova, Elena P" sort="Ivanova, Elena P" uniqKey="Ivanova E" first="Elena P." last="Ivanova">Elena P. Ivanova</name></noRegion><name sortKey="Gorshkova, Nataliya M" sort="Gorshkova, Nataliya M" uniqKey="Gorshkova N" first="Nataliya M." last="Gorshkova">Nataliya M. Gorshkova</name><name sortKey="Mikhailov, Valery V" sort="Mikhailov, Valery V" uniqKey="Mikhailov V" first="Valery V." last="Mikhailov">Valery V. Mikhailov</name><name sortKey="Svetashev, Vassillii I" sort="Svetashev, Vassillii I" uniqKey="Svetashev V" first="Vassillii I." last="Svetashev">Vassillii I. Svetashev</name></country><country name="Japon"><noRegion><name sortKey="Sawabe, Tomoo" sort="Sawabe, Tomoo" uniqKey="Sawabe T" first="Tomoo" last="Sawabe">Tomoo Sawabe</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Nicolau, Dan V" sort="Nicolau, Dan V" uniqKey="Nicolau D" first="Dan V." last="Nicolau">Dan V. Nicolau</name></noRegion></country><country name="France"><noRegion><name sortKey="Christen, Richard" sort="Christen, Richard" uniqKey="Christen R" first="Richard" last="Christen">Richard Christen</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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